A Programmable, Scalable-Throughput Interleaver

The interleaver stages of digital communication standards show a surprisingly large variation in throughput, state sizes, and permutation functions. Furthermore, data rates for 4G standards such as LTE-Advanced will exceed typical baseband clock frequencies of handheld devices. Multistream operation for Software Defined Radio and iterative decoding algorithms will call for ever higher interleave data rates. Our interleave machine is built around 8 single-port SRAM banks and can be programmed to generate up to 8 addresses every clock cycle. The scalable architecture combines SIMD and VLIW concepts with an efficient resolution of bank conflicts. A wide range of cellular, connectivity, and broadcast interleavers have been mapped on this machine, with throughputs up to more than 0.5 Gsymbol/second. Although it was designed for channel interleaving, the application domain of the interleaver extends also to Turbo interleaving. The presented configuration of the architecture is designed as a part of a programmable outer receiver on a prototype board. It offers (near) universal programmability to enable the implementation of new interleavers. The interleaver measures 2.09 mm2 in 65 nm CMOS (including memories) and proves functional on silicon

Targeting a Versatile Actuator for EU-DEMO: Real Time Monitoring of Pellet Delivery to Facilitate Burn Control

Core particle fueling, an essential task in the European demonstration fusion power plant EU-DEMO, relies on adequate pellet injection. However, pellets are fragile objects, and their delivery efficiency can hardly be assumed to be unity. Exploring kinetic control of the EU-DEMO1 scenario indicates that such missed-out pellets do cause a considerable problem for keeping a burning plasma. Missed-out pellets can cause a severe drop of plasma density that in turn results in a potential drastic loss of burn power. Efforts are under way at the ASDEX Upgrade (AUG) tokamak aiming to provide real-time monitoring of pellet arrival and announcement of missed-out cases to the control systems. To further optimize the controllers, system identification experiments have been performed to identify the dynamic response of the system to the actuator

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

One motivation of systems biology research is to understand gene functions and interactions from functional genomics data such as that derived from microarrays. Up-to-date structural and functional annotations of genes are an essential foundation of systems biology modeling. We propose that the first essential step in any systems biology modeling of functional genomics data, especially for species with recently sequenced genomes, is gene structural and functional re-annotation. To demonstrate the impact of such re-annotation, we structurally and functionally re-annotated a microarray developed, and previously used, as a tool for disease research. We quantified the impact of this re-annotation on the array based on the total numbers of structural- and functional-annotations, the Gene Annotation Quality (GAQ) score, and canonical pathway coverage. We next quantified the impact of re-annotation on systems biology modeling using a previously published experiment that used this microarray. We show that re-annotation improves the quantity and quality of structural- and functional-annotations, allows a more comprehensive Gene Ontology based modeling, and improves pathway coverage for both the whole array and a differentially expressed mRNA subset. Our results also demonstrate that re-annotation can result in a different knowledge outcome derived from previous published research findings. We propose that, because of this, re-annotation should be considered to be an essential first step for deriving value from functional genomics data

Green and hawksbill turtles in the Lesser Antilles demonstrate behavioural plasticity in inter-nesting behaviour and post-nesting migration

Satellite transmitters were deployed on three green turtles, Chelonia mydas, and two hawksbill turtles, Eretmochelys imbricata, nesting in the Lesser Antilles islands, Caribbean, between 2005-2007 to obtain preliminary information about the inter-nesting, migratory and foraging habitats in the region. Despite the extremely small dataset, both year-round residents and migrants were identified; specifically (1) two green turtles used local shallow coastal sites within 50 km of the nesting beach during all of their inter-nesting periods and then settled at these sites on completion of their breeding seasons, (2) one hawksbill turtle travelled 200 km westward before reversing direction and settling within 50 km of the original nesting beach and (3) one green and one hawksbill turtle initially nested at the proximate site, before permanently relocating to an alternative nesting site over 190 km distant. A lack of nesting beach fidelity was supported by flipper tag datasets for the region. Tagging datasets from 2002-2012 supported that some green and hawksbill individuals exhibit low fidelity to nesting beaches, whereas other females exhibited a high degree of fidelity (26 turtles tagged, 40.0km maximum distance recorded from original nesting beach). Individual turtles nesting on St Eustatius and St Maarten appear to exhibit behavioural plasticity in their inter-nesting behaviour and post-nesting migration routes in the Eastern Caribbean. The tracking and tagging data combined indicate that some of the green and hawksbill females that nest in the Lesser Antilles Islands are year-round residents, while others may nest and forage at alternative sites. Thus, continued year-round protection of these islands and implementation of protection programmes in nearby islands could contribute towards safeguarding the green and hawksbill populations of the region

Fingered electrodes for microfluidic single particle analysis

The electrical properties of particle solutions can be investigated on a single particle basis by using micro fluidic channels. The impedance can be measured across the channel using at least one pair of conductive electrodes, at least one electrode of a pair being a fingered electrode having a plurality of fingers. The pattern of fingered electrodes creates a longer and more complicated measurement signal shape which leads to a significant improvement of measurement sensitivity. An application for the proposed technology is to significantly improve the measurement sensitivity of impedance measurements on blood cells, leading to a better differentiation between different types of white blood cells. Better measurement sensitivity also enables the measurement of smaller particles and higher throughput